Just wanna share my experience

My Projects

My Projects:

1. Master in Applied Statistics

2. Master in Biostatistics

3. PhD

4. Postdoc


1. Microarray Data Analysis, an overview

2. Classification using L1-Penalized Logistic Regression.

3. Biostatistics and Statictical Bioinformatics, kuliah tamu, Jurusan Statistika, Universitas Brawijaya Malang.

4. Model averaging in dose-response study in microarray expression

5. Testing for Trend in Dose-Response Microarray Experiments. Presented for BSS Conference, Wepion-Namur, October 17, 2008.

6. Dose-Response Modeling of Gene Expression Data in pre-clinical Microarray Experiments. Presented in Workshop on Multiplicity and Microarray Analysis, Hasselt University, Diepenbeek Belgium,February 19, 2010.

7. IsoGeneGUI: a graphical user interface for analyzing dose-response studies in microarray experiments, Presented in the R user conference 2010, National Institute of Standards and Technology (NIST),  Gaithersburg, Maryland, USA,  July 21, 2010.

8. Multiple Contrast Test (MCT) for Dose-response Microarray Studies: A Resampling-based Approach. 2011 Joint Statistical Meetings, Miami Beach, Florida.

9. Detecting genetic differences between monozygous twins by next-generation sequencing. ISCB 2012 Conference 19 – 23 August 2012,  Bergen, Norway.

10. Developing R Graphical User Interfaces, presented at
a.  Workshop on Development of R software for data analysis, Hasselt University, Belgium, March 13th, 2013.
b.  Joint Seminar, Medical Epidemiology and Biostatistics Department, Karolinska Institutet, April 4th, 2013.


1. Pramana, S., Lin, D., Haldermans, P., Shkedy Z., and Verbeke, T., De Bondt, A., Talloen, W., Göehlmann,. H and Bijnens, L. (2010). “IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments “.  The R Journal 2/1. http://journal.r-project.org/archive/2010-1/RJournal_2010-1_Pramana~et~al.pdf

2.  Lin, D., Pramana, S.,  Shkedy Z., and Verbeke, T. (2009) Modeling Doseresponse Microarray data: The IsoGene library. The IsoGene R package vignette, available at: http://cran.us.rproject.org/web/packages/IsoGene/vignettes/IsoGene.pdf

3. Pramana, S., Lin, D., and Shkedy Z., (2010), IsoGeneGUI Package Vignette. Available at http://www.bioconductor.org/packages/2.7/bioc/vignettes/IsoGeneGUI/inst/doc/IsoGeneGUI.pdf

4. Pramana, S., Shkedy Z., Gohlmann, H.W., Talloen W., De Bondt, A., Straetemans, R., Lin, D., and Pinheiro, J (2012). Model-based Approaches, in Lin, D., Shkedy, Z., Yekutieli, D., Amaratunga, D. and Bijnens L. (edts). Modeling Dose-response Microarray Data in Early Drug Development Experiments Using R, Springer, http://link.springer.com/chapter/10.1007/978-3-642-24007-2_14.

5. Pramana, S., Lin, D., Haldermans P., Verbeke, T (2012). “Interfaces for Analyzing Dose–Response Studies in Microarray Experiments: IsoGeneGUI and ORIOGEN”.  in Lin, D., Shkedy, Z., Yekutieli, D., Amaratunga, D. and Bijnens L. (edts). Modeling Doseresponse Microarray Data in Early Drug Development Experiments Using R, Springer, http://link.springer.com/chapter/10.1007/978-3-642-24007-2_18.

6. Pramana, S., Lee, W., Alexeyenko, A., Pawitan., Y. “neaGUI: A Graphical User Interface for Network Enrichment Analysis”, submitted.

7. Otava, M., Kasim, A., Pramana, S., Lin, D., Shkedy, Z., Verbeke, T., Talloen W., and Bijnens. L.  “δ-clustering of Monotone Profiles for Dose-response Gene Expression Data: The ORCME R Package”. submitted.

8. Peng, Z., Skoog, L., Hellborg, H., Jonstam, G., Wingmo, I., Hjälm-Eriksson, M., Harmenberg, U., Ährlund-Richter, L, Pramana, S., Pawitan, Y., Nilsson, M.S., and Li, C. (2014). “An Expression Signature at Diagnosis to Estimate Prostate Cancer Patients Overall Survival”. Prostate Cancer and Prostatic Diseases. http://www.nature.com/pcan/journal/vaop/ncurrent/full/pcan201357a.html 

9. Bachmann, J., Burté, F., Pramana, S., Conte, I., Brown, B.J, Orimadegun, A.E., Ajetunmobi, W.A., Afolabi, N.K, Akinkunmi, F., Omokhodion, S., Akinbami F.O., Shokunbi W.A., Kampf, C., Pawitan, Y., Uhlén, M., Sodeinde, O., Schwenk, J.M., Wahlgren, M., Fernandez-Reyes, D. and Nilsson, P. (2013). Human protein signatures in plasma discriminate childhood severe malaria syndromes. Submitted

10 Pramana. S., Lee., W., Alexeyenko. A., and Pawitan, Y. (2013). Network Enrichment Analysis using neaGUI Package. http://www.bioconductor.org/packages/2.13/bioc/vignettes/neaGUI/inst/doc/neaGUI_vignette.pdf


  1. saya sdg nyari ide utk topik ph.D sy di bidang statistika,
    tlg dong kasih contoh2 topik disertsi yg bagus. makasiy… 🙂

    Comment by yani | May 16, 2011 | Reply

  2. blognya keren pak 🙂

    salam kenal,
    anggota milis biotek juga saya 😀

    Comment by Dwi Andi Listiawan | February 7, 2013 | Reply

    • salam kenal juga 🙂

      Comment by Tio | February 7, 2013 | Reply

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